Karim Benzema’s extra-time header was his fourth of the tie against Chelsea.

Karim Benzema’s extra-time header was his fourth of the tie against Chelsea.Credit:Getty

But they failed to find the net again despite intense pressure in the second half,missing several chances.

Instead it was Villarreal,semi-finalists in 2006,who scored against the run of play with Chukwueze beating goalkeeper Manuel Neuer with a left-foot effort to silence the home crowd.

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The entire city of Villarreal — with a population of 50,000 — could fit into Bayern’s 75,000-capacity stadium.

“We feel a lot of happiness. Ever since the draw paired us with Bayern,we have been telling ourselves that we could do it,” Villarreal forward Gerard Moreno said. “The belief and the way this team competes has helped us to achieve it.”

Villarreal’s Champions League hero Samuel Chukwueze.

Villarreal’s Champions League hero Samuel Chukwueze.Credit:Getty

“In the first leg we made the mistake of not finishing the tie,and all the comments serve as motivation for us. They made the mistake today of not killing us off and we took advantage of that.”

They will play Liverpool or Benfica in the last four,with the English side leading 3-1after the first leg in Portugal.

Bayern coach Julian Nagelsmann fielded an extremely attacking formation with Jamal Musiala,Lewandowski and Thomas Mueller up front but they had only one effort on target in the first half with Musiala’s weak header on the half-hour mark.

Villarreal,unchanged from last week’s 1-0 win in Spain,were comfortable staying back and efficiently absorbing the waves of Bayern attacks while remaining a threat on the break.

Chelsea’s Kai Havertz after a missed chance at the Bernabeu.

Chelsea’s Kai Havertz after a missed chance at the Bernabeu.Credit:Getty

But Unai Emery’s team looked out of sorts after the break,piling up errors and losing possession as Bayern instantly upped the pressure.

Bayern defender Dayot Upamecano should have done better when his shot from eight metres flew over the bar in the 49th minute but Lewandowski did not miss three minutes later.

Bayern intercepted a sloppy Villarreal pass and the Pole finished the quick move with a low drive off the post.

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The Bavarians,who had scored a total of 20 goals in their previous four home games in the competition this term,came close to a second goal in the 71st but Mueller’s diving header went wide.

The Bavarians,who had scored a total of 20 goals in their previous four home games in the competition this term,came close to a second goal in the 71st but Mueller’s diving header went wide.

It was left to Villarreal,Europa League winners last year,to punish the hosts with a sucker punch through Nigeria winger Chukwueze,to reach the semis for the first time in 16 years.

“Looking at just today’s game we should have advanced,” Mueller said. “Accepting today’s result ... I don’t really know what to say. Conceding that goal is extremely bitter.“

AP,Reuters

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